Bioinformatics

The Arabidopsis community is currently well-served by online resources, however most have a genetics or genomics emphasis. Over a decade ago, we recognized the need for protein-based resources to assist emerging protein-based technologies, namely subcellular proteomics and the SUBA database. We have now been involved in the establishment of a variety of online tools and portals that often combine public data to enable deeper analyses to occur.

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Current Projects

• Expansion of the MASCP Gator to incorporate new features
• Re-examination of non-synonymous SNPs and PTMs using the 1001 Proteomes
• Development of the ModHunter portal for comparative PTM analysis of Arabidopsis proteins